@exselsior yes I am launching through FAF client and as for the mods here is the list:
BrewLAN
BrewLAN_Cursed
BrewLAN_Gameplay
BrewLAN_Plenae
BrewLAN_RNG
BrewLAN_Units
DefencesExpand
Factions Research
No Build Restrictions in Campaign
rks_explosions
Graphic enhancement mod v1.1
Wyvern BattlePack
Template_Rotator
Noshake
GroupControls
V2 sequentially upgrading extractors

After completing the initial objectives, the mission is not displaying all objectives and the map is not expanding even though I have wiped all the enemy units and structures.